ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* CTGGGAAAAGGCAGAGCAAG mismatches: 2 bulges: 1 |
pre-miRNA
CAGAGAAGAGACAGGACAAAGGCTGGGAAAAGGCAGAGCAAGAATGTAGCTATTGACAGAAATGGTGAAGTGAGAATGAGAGGAGAGAGATATCTGTTGTG
GCTACGCTCATGCACTGCCTCTTCCCTGGCTCTCTCTCTTTCTTGTTCC
dot-bracket secondary structure
).(((((((((.((......(((((((((.((((((.(((.((.(((((((((.((((((.((..........................)).)))))))))
)))))).)).))).)))))).))))).)))))).)))).))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGAGAAGAGACAGGACAAAGGCTGGGAAAAGGCAGAGCAAGAATGTAGCTATTGACAGAAATGGTGAAGTGAGAATGAGAGGAGAGAGATATCTGTTGTG
GCTACGCTCATGCACTGCCTCTTCCCTGGCTCTCTCTCTTTCTTGTTCC
dot-bracket secondary structure
).(((((((((.((......(((((((((.((((((.(((.((.(((((((((.((((((.((..........................)).)))))))))
)))))).)).))).)))))).))))).)))))).)))).))))).....
SIMILARITIES| miRBase ahy-MIR408: 2.0E-12 PMRD gma-miR408a: 5.0E-16 microPC miR408: 6.0E-59 | UniProt no hits RFAM 8MIR408: 3.0E-33 | most similar mature miRNAs |
Identical with: miR408 from microPC (MNEST045394) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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