ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* CTGGGAAAAGGCAGAGCAAG mismatches: 2 bulges: 1 |
pre-miRNA
AGAGAAGAGACAGGACAAAGGCTGGGAAAAGGCAGAGCAAGAATGTAGCTATTGACAGAAATGGTGAAGTGAGAATGAGAGGAGAGAGATATCTGTTGTG
GCTACGCTCATGCACTGCCTCTTCCCTGGCTCTCTCTCTTTCTTGTTCC
dot-bracket secondary structure
.(((((((((.((......(((((((((.((((((.(((.((.(((((((((.((((((.((..........................)).)))))))))
)))))).)).))).)))))).))))).)))))).)))).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAGAAGAGACAGGACAAAGGCTGGGAAAAGGCAGAGCAAGAATGTAGCTATTGACAGAAATGGTGAAGTGAGAATGAGAGGAGAGAGATATCTGTTGTG
GCTACGCTCATGCACTGCCTCTTCCCTGGCTCTCTCTCTTTCTTGTTCC
dot-bracket secondary structure
.(((((((((.((......(((((((((.((((((.(((.((.(((((((((.((((((.((..........................)).)))))))))
)))))).)).))).)))))).))))).)))))).)))).))))).....
SIMILARITIES| miRBase ahy-MIR408: 0.000000000002 PMRD gma-miR408a: 5e-16 microPC miR408: 6e-59 | UniProt no hits RFAM MIR408: 3e-33 | most similar mature miRNAs |
Identical with: miR408 from microPC (MNEST045394) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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