ABOUT THIS RECORDspecies: Tetranychus urticae
miRNA family: miR-2799
source: miRNEST
Taxonomy by NCBI:
Tetranychus urticae Tetranychus Tetranychidae Tetranychoidea Raphignathae Eleutherengona Anystina Prostigmata Trombidiformes Acariformes Acari Arachnida Chelicerata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGGTTTATTAACATGATTA miRNA* ATCATTTAAAAAACCTAATC mismatches: 4 bulges: 1 |
pre-miRNA
ATCTTCATTTGAATCATTTAAAAAACCTAATCCAACTCCAATAGCTGAATAGAGTAAGGCAACTACACCAAACGTGTTTCCAGTGACAGCACCAGTTTTT
CCAATGTAATTTAATATTTGTGATCTACGAACTGCCCATGAAAGAGGTTTATTAACATGATTAGAATCGATT
dot-bracket secondary structure
...((.((((.((((((((((.((((((..((..((((.............))))..((((...((((.....))))(((....((...(((.(((.((.
..(((...))).)).))).))).))...))).))))...))...)))))).)))).)))))).)))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCTTCATTTGAATCATTTAAAAAACCTAATCCAACTCCAATAGCTGAATAGAGTAAGGCAACTACACCAAACGTGTTTCCAGTGACAGCACCAGTTTTT
CCAATGTAATTTAATATTTGTGATCTACGAACTGCCCATGAAAGAGGTTTATTAACATGATTAGAATCGATT
dot-bracket secondary structure
...((.((((.((((((((((.((((((..((..((((.............))))..((((...((((.....))))(((....((...(((.(((.((.
..(((...))).)).))).))).))...))).))))...))...)))))).)))).)))))).)))).))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
