ABOUT THIS RECORDspecies: Crassostrea gigas
miRNA family: mir-1
source: miRNEST
Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTTAATAAGTATGTA miRNA* CGTACAATATGAACATTCACTC mismatches: 4 bulges: 1 |
pre-miRNA
TCATGTACAAATGGAATGTTAATAAGTATGTATCAAAAAATATTCTCATTATCTACAGGATTTGAAATGATGAATAATCGAGATATATATACACATGATA
TATAAGTACGTACAATATGAACATTCACTCCTTGACTT
dot-bracket secondary structure
.............(((((((.(((.(((((((((......((((((((((((((...))))....))))).)))))...))..(((((((.......)))
))))..)))))))..))).)))))))............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TCATGTACAAATGGAATGTTAATAAGTATGTATCAAAAAATATTCTCATTATCTACAGGATTTGAAATGATGAATAATCGAGATATATATACACATGATA
TATAAGTACGTACAATATGAACATTCACTCCTTGACTT
dot-bracket secondary structure
.............(((((((.(((.(((((((((......((((((((((((((...))))....))))).)))))...))..(((((((.......)))
))))..)))))))..))).)))))))............
SIMILARITIES| miRBase gga-mir-1b: 0.0004 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
