ABOUT THIS RECORDspecies: Ascaris suum
miRNA family: mir-1420
source: miRNEST
Taxonomy by NCBI:
Ascaris suum Ascaris Ascarididae Ascaridoidea Ascaridida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGTGCGACTGGATCGTATT miRNA* TATCGTCCAGTAACGCTATCT mismatches: 4 bulges: 0 |
pre-miRNA
AGCTGAAGGAGAAGGTGCGACTGGATCGTATTTGGATTGCGTCCAACAATTGCCCTCATTCGTTTCTCATCGGATGGCCTATCAGCAATTTTATTGCACA
TTTCTCGTGAGCGTCAATTTGCATTCTGCTTGCATCAGTATCGTCCAGTAACGCTATCTTCTAAAGA
dot-bracket secondary structure
..((..((((((.((((..(((((((.((((((((((...)))))..((((((..(((((((........))))))).......))))))((..(((.((
(.....))).)))..))..((((.......))))..))))).)))))))..)))).))))))..)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGCTGAAGGAGAAGGTGCGACTGGATCGTATTTGGATTGCGTCCAACAATTGCCCTCATTCGTTTCTCATCGGATGGCCTATCAGCAATTTTATTGCACA
TTTCTCGTGAGCGTCAATTTGCATTCTGCTTGCATCAGTATCGTCCAGTAACGCTATCTTCTAAAGA
dot-bracket secondary structure
..((..((((((.((((..(((((((.((((((((((...)))))..((((((..(((((((........))))))).......))))))((..(((.((
(.....))).)))..))..((((.......))))..))))).)))))))..)))).))))))..)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
