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ABOUT THIS RECORD

ID: MNEST009243
species: Pristionchus pacificus
miRNA family: miR-3533
source: miRNEST

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGTGCGATGTCGATATC

miRNA*
CATCGACTGTAATTCACGA

mismatches: 4
bulges: 2

View larger
pre-miRNA
NCAGCCTGCATTCATTGGAATGGCATCGACTGTAATTCACGAGACGACCCTACACAGTATCATGAAGTGCGATGTCGATATCAGAAAGGACCTGTATGCC
AC


dot-bracket secondary structure
...((.((((.((.((....(((.((((((.(((.((((.((.((...........)).)).)))).)))...)))))).)))..)).))..)))).)).
..



SIMILARITIES
miRBase gga-mir-3533: 0.00002

PMRD no hits

microPC no hits
UniProt sp|P90689|ACT_BRUMA: 0.000000007

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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