ABOUT THIS RECORDspecies: Cynops pyrrhogaster
miRNA family: mir-17
source: miRNEST
Taxonomy by NCBI:
Cynops pyrrhogaster Cynops Salamandridae Salamandroidea Caudata Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGCACTGTAAGCACTTTTG miRNA* AGAAGCGCTTCCATTGCAGTAG mismatches: 3 bulges: 1 |
pre-miRNA
CATGTATTGCCGTGGTAATGCTAGAAGCGCTTCCATTGCAGTAGGTACAAGAAGCTACTGCACTGTAAGCACTTTTGCACAACCCTGACTACGTAT
dot-bracket secondary structure
.(((((....((.(((..(((.(((((.((((.((.((((((((..........)))))))).)).)))).))))))))..))).))..)))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATGTATTGCCGTGGTAATGCTAGAAGCGCTTCCATTGCAGTAGGTACAAGAAGCTACTGCACTGTAAGCACTTTTGCACAACCCTGACTACGTAT
dot-bracket secondary structure
.(((((....((.(((..(((.(((((.((((.((.((((((((..........)))))))).)).)))).))))))))..))).))..)))))..
SIMILARITIES| miRBase oan-mir-106: 2e-23 PMRD no hits microPC no hits | UniProt no hits RFAM mir-17: 2e-20 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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