miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Xenopus laevis, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum



ABOUT THIS RECORD

ID: MNEST009503
species: Cynops pyrrhogaster
miRNA family: mir-17
source: miRNEST

Taxonomy by NCBI:
Cynops pyrrhogaster Cynops Salamandridae Salamandroidea Caudata Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTGCACTGTAAGCACTTTTG

miRNA*
AGAAGCGCTTCCATTGCAGTAG

mismatches: 3
bulges: 1

View larger
pre-miRNA
CATGTATTGCCGTGGTAATGCTAGAAGCGCTTCCATTGCAGTAGGTACAAGAAGCTACTGCACTGTAAGCACTTTTGCACAACCCTGACTACGTAT

dot-bracket secondary structure
.(((((....((.(((..(((.(((((.((((.((.((((((((..........)))))))).)).)))).))))))))..))).))..)))))..


SIMILARITIES
miRBase oan-mir-106: 2e-23

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-17: 2e-20
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;