ABOUT THIS RECORDspecies: Ambystoma tigrinum tigrinum
miRNA family: miR-4271
source: miRNEST
Taxonomy by NCBI:
Ambystoma tigrinum tigrinum Ambystoma tigrinum Ambystoma Ambystomatidae Salamandroidea Caudata Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGGGAAAAAAAGGTGGGGGA miRNA* CCCCCCTTTTTATTTTGTGG mismatches: 2 bulges: 1 |
pre-miRNA
TAAAGGCCCCCGCGGGAAAAAAAGGTGGGGGAACCCCCCCCACAAAAAAAAATAACCTCTGGGGGGGGGGCCCCCCCTTTTTATTTTGTGGGGGACACC
dot-bracket secondary structure
......(((((((((((.(((((((.(((((..(((((((((.................)))))))))..)))))))))))).))))))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAAGGCCCCCGCGGGAAAAAAAGGTGGGGGAACCCCCCCCACAAAAAAAAATAACCTCTGGGGGGGGGGCCCCCCCTTTTTATTTTGTGGGGGACACC
dot-bracket secondary structure
......(((((((((((.(((((((.(((((..(((((((((.................)))))))))..)))))))))))).))))))))))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
