ABOUT THIS RECORDspecies: Peromyscus polionotus subgriseus
miRNA family: miR-3473
source: miRNEST
Taxonomy by NCBI:
Peromyscus polionotus subgriseus Peromyscus polionotus Peromyscus Neotominae Cricetidae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAGATGGCTCAGGGGTT miRNA* GTCCTGAGTTCAATTCCTAGC mismatches: 2 bulges: 2 |
pre-miRNA
GGCTGGAGAGATGGCTCAGGGGTTAAGAACAGTGGCTGCTTTTCCAGAGGTCCTGAGTTCAATTCCTAGC
dot-bracket secondary structure
.(((((.(((.((((((((((.((..(((.(((....))).)))...)).))))))).))).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGCTGGAGAGATGGCTCAGGGGTTAAGAACAGTGGCTGCTTTTCCAGAGGTCCTGAGTTCAATTCCTAGC
dot-bracket secondary structure
.(((((.(((.((((((((((.((..(((.(((....))).)))...)).))))))).))).))))))))
SIMILARITIES| miRBase mmu-mir-3473b: 0.0008 PMRD no hits microPC no hits | UniProt no hits RFAM tRNA: 3e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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