ABOUT THIS RECORDspecies: Peromyscus polionotus subgriseus
miRNA family: miR-1186
source: miRNEST
Taxonomy by NCBI:
Peromyscus polionotus subgriseus Peromyscus polionotus Peromyscus Neotominae Cricetidae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGTGCTGGGATTAAAGGAAT miRNA* TTCTCTGTTTAACAGCACTGGC mismatches: 4 bulges: 1 |
pre-miRNA
ATCAAGACAGCGTTTCTCTGTTTAACAGCACTGGCTATCCTAGCTCTGTAGACCAGGCTGGCCTCGAACTCGCAGAGATCTGCCTGCCTCTGCTTTCTGAG
TGCTGGGATTAAAGGAATGTGCCACCA
dot-bracket secondary structure
)........((((((((.((.((..((((((((((((...)))))..(((((.(((((.((.(((.........))).)).)))))..)))))......))
))))).)).)).)))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCAAGACAGCGTTTCTCTGTTTAACAGCACTGGCTATCCTAGCTCTGTAGACCAGGCTGGCCTCGAACTCGCAGAGATCTGCCTGCCTCTGCTTTCTGAG
TGCTGGGATTAAAGGAATGTGCCACCA
dot-bracket secondary structure
)........((((((((.((.((..((((((((((((...)))))..(((((.(((((.((.(((.........))).)).)))))..)))))......))
))))).)).)).)))))))).......
SIMILARITIES| miRBase mmu-mir-3470a: 1.0E-13 PMRD no hits microPC no hits | UniProt no hits RFAM K7SK: 7.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
