ABOUT THIS RECORDspecies: Pan troglodytes verus
miRNA family: mir-22
source: miRNEST
Taxonomy by NCBI:
Pan troglodytes verus Pan troglodytes Pan Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTTCTTCAGTGGCAAGCTTT miRNA* AGCTGCCAGTTGAAGAACTGT mismatches: 0 bulges: 2 |
pre-miRNA
CCAGCACCAGGAGCCTGTTCCTCTCACGCCCTCACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGT
TGAAGAACTGTTGCCCTCTGCCCCTGGCTTCGAGGAGGAGGAGGAGCTGCTTTCCCCAT
dot-bracket secondary structure
.........(((((..((((((((.....((((.((.(((.(((..((((((((((((((((((((.((((((....(((...))).))))))))))).)
)))))))))))))).))).)))...))....))))....)))))))).)))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCAGCACCAGGAGCCTGTTCCTCTCACGCCCTCACCTGGCTGAGCCGCAGTAGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGT
TGAAGAACTGTTGCCCTCTGCCCCTGGCTTCGAGGAGGAGGAGGAGCTGCTTTCCCCAT
dot-bracket secondary structure
.........(((((..((((((((.....((((.((.(((.(((..((((((((((((((((((((.((((((....(((...))).))))))))))).)
)))))))))))))).))).)))...))....))))....)))))))).)))))......
SIMILARITIES| miRBase mmu-mir-22: 9e-49 PMRD tae-miR1134: 0.0005 microPC no hits | UniProt no hits RFAM mir-22: 1e-41 | most similar mature miRNAs |
Identical with: mne-mir-22 from miRBase (MNEST028181) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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