ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: miR-125b
source: miRBase, original name: bfl-mir-125b (MI0010518)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACAAGTTAGGGTCTCAGGGA miRNA* CCAAGATCCTAACCTGTGAGC mismatches: 2 bulges: 1 |
pre-miRNA
GTGGAGGGCGTATGTCACCCAGCTCCCAAGATCCTAACCTGTGAGCCATGGACATCACAAGTTAGGGTCTCAGGGAATGGGG
dot-bracket secondary structure
......(((....))).((((..((((.((((((((((.(((((.(....)...))))).))))))))))..)))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
GTGGAGGGCGTATGTCACCCAGCTCCCAAGATCCTAACCTGTGAGCCATGGACATCACAAGTTAGGGTCTCAGGGAATGGGG
dot-bracket secondary structure
......(((....))).((((..((((.((((((((((.(((((.(....)...))))).))))))))))..)))).)))).
SIMILARITIES| miRBase bfl-mir-125a: 2e-41 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 6e-30 |
Identical with: bfl-mir-125a from miRBase (MNEST024674) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
