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Species belonging to selected taxon:

Branchiostoma floridae



ABOUT THIS RECORD

ID: MNEST024675
species: Branchiostoma floridae
miRNA family: miR-125b
source: miRBase, original name: bfl-mir-125b (MI0010518)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCACAAGTTAGGGTCTCAGGGA

miRNA*
CCAAGATCCTAACCTGTGAGC

mismatches: 2
bulges: 1

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pre-miRNA
GTGGAGGGCGTATGTCACCCAGCTCCCAAGATCCTAACCTGTGAGCCATGGACATCACAAGTTAGGGTCTCAGGGAATGGGG

dot-bracket secondary structure
......(((....))).((((..((((.((((((((((.(((((.(....)...))))).))))))))))..)))).)))).


SIMILARITIES
miRBase bfl-mir-125a: 2e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM lin-4: 6e-30

Identical with: bfl-mir-125a from miRBase (MNEST024674)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"




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