ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-200
source: miRBase, original name: csa-mir-200 (MI0007200)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATACTGCCTGGTAATGATGA miRNA* ATCAACCCGGTAGTACGATA mismatches: 4 bulges: 2 |
pre-miRNA
GGTCACTGAAGCATCAACCCGGTAGTACGATATGTGAGCTGTATAATACTGCCTGGTAATGATGATTCAGTGGCGTCGCG
dot-bracket secondary structure
.(((((((((.((((((((.(((((((..((((.......))))..))))))).)))..))))).)))))))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
GGTCACTGAAGCATCAACCCGGTAGTACGATATGTGAGCTGTATAATACTGCCTGGTAATGATGATTCAGTGGCGTCGCG
dot-bracket secondary structure
.(((((((((.((((((((.(((((((..((((.......))))..))))))).)))..))))).)))))))))......
SIMILARITIES| miRBase xtr-mir-200b: 0.0000009 PMRD no hits microPC no hits | UniProt no hits RFAM mir-200: 2e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
