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Species belonging to selected taxon:

Ciona intestinalis, Ciona savignyi



ABOUT THIS RECORD

ID: MNEST025332
species: Ciona savignyi
miRNA family: mir-200
source: miRBase, original name: csa-mir-200 (MI0007200)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAATACTGCCTGGTAATGATGA

miRNA*
ATCAACCCGGTAGTACGATA

mismatches: 4
bulges: 2

View larger
pre-miRNA
GGTCACTGAAGCATCAACCCGGTAGTACGATATGTGAGCTGTATAATACTGCCTGGTAATGATGATTCAGTGGCGTCGCG

dot-bracket secondary structure
.(((((((((.((((((((.(((((((..((((.......))))..))))))).)))..))))).)))))))))......


SIMILARITIES
miRBase xtr-mir-200b: 0.0000009

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-200: 2e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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