ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-1473
source: miRBase, original name: csa-mir-1473 (MI0007131)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAGCTCGGTTTTATGGGTGC miRNA* TCCCAAATCTTCGATCTTGTGAGA mismatches: 7 bulges: 2 |
pre-miRNA
CGAAACATCATTAAATAACCTACGTGGGTCTGGCTCCCAAATCTTCGATCTTGTGAGATATATTCTCAAGCTCGGTTTTATGGGTGCCGCATCCAACGAC
A
dot-bracket secondary structure
......................(((((((.((((.((((.....((((.((..(((((.....))))))).)))).....)))).)))).)))).)))..
.
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
CGAAACATCATTAAATAACCTACGTGGGTCTGGCTCCCAAATCTTCGATCTTGTGAGATATATTCTCAAGCTCGGTTTTATGGGTGCCGCATCCAACGAC
A
dot-bracket secondary structure
......................(((((((.((((.((((.....((((.((..(((((.....))))))).)))).....)))).)))).)))).)))..
.
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-1473: 1e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
