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Species belonging to selected taxon:
Ciona intestinalis
,
Ciona savignyi
ABOUT THIS RECORD
ID:
MNEST025338
species:
Ciona savignyi
miRNA family:
mir-1473
source:
miRBase, original name:
csa-mir-1473
(
MI0007131
)
Taxonomy by NCBI:
Ciona savignyi
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCAAGCTCGGTTTTATGGGTGC
miRNA*
TCCCAAATCTTCGATCTTGTGAGA
mismatches:
7
bulges:
2
View larger
pre-miRNA
CGAAACATCATTAAATAACCTACGTGGGTCTGGC
TCCCAAATCTTCGATCTTGTGAGA
TATATTC
TCAAGCTCGGTTTTATGGGTGC
CGCATCCAACGAC
A
dot-bracket secondary structure
......................(((((((.((((
.((((.....((((.((..(((((
.....))
))))).)))).....)))).))
)).)))).)))..
.
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-1473: 1e-37
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"