ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-133
source: miRBase, original name: xla-mir-133a (MI0001455)
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCTTCAACCAGCTGT miRNA* AGCTGGTAAAATGGAACCAAAT mismatches: 5 bulges: 0 |
pre-miRNA
CAGTGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGGATTGCATTG
dot-bracket secondary structure
((((((..(.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).)..))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
CAGTGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGGATTGCATTG
dot-bracket secondary structure
((((((..(.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).)..))))))
SIMILARITIES| miRBase xtr-mir-133a: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 2e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"
