miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST025663
species: Xenopus laevis
miRNA family: mir-133
source: miRBase, original name: xla-mir-133a (MI0001455)

Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTGGTCCCCTTCAACCAGCTGT

miRNA*
AGCTGGTAAAATGGAACCAAAT

mismatches: 5
bulges: 0

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pre-miRNA
CAGTGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGGATTGCATTG

dot-bracket secondary structure
((((((..(.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).)..))))))

SIMILARITIES

miRBase xtr-mir-133a: 6e-42

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-133: 2e-27

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Watanabe T, Takeda A, Mise K, Okuno T, Suzuki T, Minami N, Imai H, FEBS Lett. 579:318-324(2005)., "Stage-specific expression of microRNAs during Xenopus development"