miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST025675
species: Xenopus laevis
miRNA family: mir-1306
source: miRBase, original name: xla-mir-1306 (MI0008374)

Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACGTTGGCTCTGGTGGTG

miRNA*
CCACCTCCCCTGCAAACGTCC

mismatches: 4
bulges: 3

View larger
pre-miRNA
AAGAAGAGCCTCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGTAATGGACGTTGGCTCTGGTGGTGATGGACAGTCACA

dot-bracket secondary structure
..((....((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....))...


SIMILARITIES
miRBase gga-mir-1306: 1e-33

PMRD no hits

microPC no hits
UniProt sp|Q9EQM6|DGCR8_MOUSE: 0.00000008

RFAM mir-1306: 6e-30

Identical with: gga-mir-1306 from miRBase (MNEST026047)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,




Liczniki na strone;