miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST025675
species: Xenopus laevis
miRNA family: mir-1306
source: miRBase, original name: xla-mir-1306 (MI0008374)

Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACGTTGGCTCTGGTGGTG

miRNA*
 CCACCTCCCCTGCAAACGTCC

mismatches: 4
bulges: 3
View larger
pre-miRNA
 AAGAAGAGCCTCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGTAATGGACGTTGGCTCTGGTGGTGATGGACAGTCACA

dot-bracket secondary structure
..((....((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....))...


SIMILARITIES
miRBase gga-mir-1306: 1e-33

PMRD no hits

microPC no hits		UniProt sp|Q9EQM6|DGCR8_MOUSE: 0.00000008

RFAM mir-1306: 6e-30

Identical with: gga-mir-1306 from miRBase (MNEST026047)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Biasci D, Giudetti G, Barsacchi G, Andreazzoli M, Unpublished (2008).,



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