ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: miR-3523
source: miRBase, original name: gga-mir-3523 (MI0015375)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGCGCAGTGCCTCGTCCTCGA miRNA* GAGTGCGAGGCGCTGCGGGGG mismatches: 3 bulges: 1 |
pre-miRNA
GCCGAGCCGAACGGAGCCGAGCGGCGGGGCCATGGTGAACCTGCGGGTGTGTGCGCTGGAGTGCGAGGCGCTGCGGGGGCTGCTGCAGGAGCGCGCCGCG
CAGTGCCTCGTCCTCGACTGCCGCTCCTTCTTCTCCTTCAACGCCGCGCACATCCGCGGCTCCTGC
dot-bracket secondary structure
((.((((((..((((.....((((((..(....((.(((...(.(((.(((.(((.(.(((..((((((((((((((.((.(((.....))))).)).))
))))))))))..))).).)))))).))).)))).))..)..)))))).....))))))))))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"
GCCGAGCCGAACGGAGCCGAGCGGCGGGGCCATGGTGAACCTGCGGGTGTGTGCGCTGGAGTGCGAGGCGCTGCGGGGGCTGCTGCAGGAGCGCGCCGCG
CAGTGCCTCGTCCTCGACTGCCGCTCCTTCTTCTCCTTCAACGCCGCGCACATCCGCGGCTCCTGC
dot-bracket secondary structure
((.((((((..((((.....((((((..(....((.(((...(.(((.(((.(((.(.(((..((((((((((((((.((.(((.....))))).)).))
))))))))))..))).).)))))).))).)))).))..)..)))))).....))))))))))..))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q64623|DUS1_RAT: 0.00000003 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"
