ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-143
source: miRBase, original name: ppy-mir-143 (MI0002551)
SEQUENCE & STRUCTURE| miRNA TGAGATGAAGCACTGTAGCTCA miRNA* AGGTGCAGTGCTGCATCTCTGG mismatches: 3 bulges: 0 |
pre-miRNA
GCGCAGCGCCCTGTCTCCCAGCCTGAGGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTTC
TGCAGC
dot-bracket secondary structure
..((((.((....((((.(..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..).))))....)).)
)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GCGCAGCGCCCTGTCTCCCAGCCTGAGGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTCAGGAAGAGAGAAGTTGTTC
TGCAGC
dot-bracket secondary structure
..((((.((....((((.(..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..).))))....)).)
)))...
SIMILARITIES| miRBase lla-mir-143: 2e-55 PMRD no hits microPC no hits | UniProt no hits RFAM mir-143: 9e-42 |
Identical with: mmu-mir-143 from miRBase (MNEST031876) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
