ABOUT THIS RECORDspecies: Ovis aries
miRNA family: mir-154
source: miRBase, original name: oar-mir-377 (MI0016955)
Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCACACAAAGGCAACTTTTGT miRNA* AGAGGTTGCCTTTGGTGAATTC mismatches: 0 bulges: 2 |
pre-miRNA
AAGAGGTATCTTGGTGCTCAGGCCCTGCTGACGTTTGATCCTTGAGCAGAGGTTGCCTTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAA
CTTTTGTTTGAGTATCAAATCCTGCTTGGGA
dot-bracket secondary structure
..(((.(((....))))))...(((.((....(((((((.((..(((((((((((((((((((((.(((((.........).)))))))).)))))))))
))))))))..)).)))))))...))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
AAGAGGTATCTTGGTGCTCAGGCCCTGCTGACGTTTGATCCTTGAGCAGAGGTTGCCTTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAA
CTTTTGTTTGAGTATCAAATCCTGCTTGGGA
dot-bracket secondary structure
..(((.(((....))))))...(((.((....(((((((.((..(((((((((((((((((((((.(((((.........).)))))))).)))))))))
))))))))..)).)))))))...))..))).
SIMILARITIES| miRBase oar-mir-377: 2e-70 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-31 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"
