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Species belonging to selected taxon:

Bos taurus, Ovis aries, Bos indicus, Bos sp., Capra hircus



ABOUT THIS RECORD

ID: MNEST033827
species: Ovis aries
miRNA family: mir-154
source: miRBase, original name: oar-mir-377 (MI0016955)

Taxonomy by NCBI:
Ovis aries Ovis Caprinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCACACAAAGGCAACTTTTGT

miRNA*
AGAGGTTGCCTTTGGTGAATTC

mismatches: 0
bulges: 2

View larger
pre-miRNA
AAGAGGTATCTTGGTGCTCAGGCCCTGCTGACGTTTGATCCTTGAGCAGAGGTTGCCTTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAA
CTTTTGT
TTGAGTATCAAATCCTGCTTGGGA


dot-bracket secondary structure
..(((.(((....))))))...(((.((....(((((((.((..(((((((((((((((((((((.(((((.........).)))))))).)))))))))
)))))))
)..)).)))))))...))..))).



SIMILARITIES
miRBase oar-mir-377: 2e-70

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-154: 2e-31

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D, Genome Res. 20:1651-1662(2010)., "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing"




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