ABOUT THIS RECORDspecies: Danio rerio
source: miRBase, original name: dre-mir-3906 (MI0016407)
Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAGCATTTTGAATGCAGATTT miRNA* GCTCTGCATAAACTCTTATTCCAGTGGGACTTGTCCAAAGGTCAGATAAAAGC mismatches: 8 bulges: 33 |
pre-miRNA
GATAGACCTACAGTGAAGCTCTGCATAAACTCTTATTCCAGTGGGACTTGTCCAAAGGTCAGATAAAAGCATTTTGAATGCAGATTTTTGAGGTTTCTC
dot-bracket secondary structure
((.((((((.((..((((.(((((((...........((..((((.....))))..))(((((.........)))))))))))))))))))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Hsu RJ, Lin CY, Hoi HS, Zheng SK, Lin CC, Tsai HJ, Nucleic Acids Res. 38:4384-4393(2010)., "Novel intronic microRNA represses zebrafish myf5 promoter activity through silencing dickkopf-3 gene"
GATAGACCTACAGTGAAGCTCTGCATAAACTCTTATTCCAGTGGGACTTGTCCAAAGGTCAGATAAAAGCATTTTGAATGCAGATTTTTGAGGTTTCTC
dot-bracket secondary structure
((.((((((.((..((((.(((((((...........((..((((.....))))..))(((((.........)))))))))))))))))))))))).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Hsu RJ, Lin CY, Hoi HS, Zheng SK, Lin CC, Tsai HJ, Nucleic Acids Res. 38:4384-4393(2010)., "Novel intronic microRNA represses zebrafish myf5 promoter activity through silencing dickkopf-3 gene"
