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Species belonging to selected taxon:
Danio rerio
,
Oryzias latipes
,
Salmo salar
,
Ictalurus punctatus
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Gadus morhua
,
Ictalurus furcatus
,
Oreochromis niloticus
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Dissostichus mawsoni
,
Osmerus mordax
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Esox lucius
,
Takifugu rubripes
,
Sebastes caurinus
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Rutilus rutilus
,
Poecilia reticulata
,
Oncorhynchus tshawytscha
,
Paralichthys olivaceus
,
Psetta maxima
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST034524
species:
Danio rerio
source:
miRBase, original name:
dre-mir-3906
(
MI0016407
)
Taxonomy by NCBI:
Danio rerio
Danio
Cyprinidae
Cyprinoidea
Cypriniformes
Cypriniphysi
Otophysi
Ostariophysi
Otocephala
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAAGCATTTTGAATGCAGATTT
miRNA*
GCTCTGCATAAACTCTTATTCCAGTGGGACTTGTCCAAAGGTCAGATAAAAGC
mismatches:
8
bulges:
33
View larger
pre-miRNA
GATAGACCTACAGTGAA
GCTCTGCATAAACTCTTATTCCAGTGGGACTTGTCCAAAGGTCAGAT
AAAAGC
ATTTTGAATGCAGATTT
TTGAGGTTTCTC
dot-bracket secondary structure
((.((((((.((..(((
(.(((((((...........((..((((.....))))..))(((((.
......
..)))))))))))))))
))))))))).))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Northern
references
[
1
] Hsu RJ, Lin CY, Hoi HS, Zheng SK, Lin CC, Tsai HJ,
Nucleic Acids Res. 38:4384-4393(2010).
,
"Novel intronic microRNA represses zebrafish myf5 promoter activity through silencing dickkopf-3 gene"