ABOUT THIS RECORDspecies: Strongylocentrotus purpuratus
source: miRBase, original name: spu-mir-2001 (MI0010269)
Taxonomy by NCBI:
Strongylocentrotus purpuratus Strongylocentrotus Strongylocentrotidae Echinoida Echinacea Euechinoidea Echinoidea Echinozoa Eleutherozoa Echinodermata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGTGACCGATATAATGGGCAT miRNA* GTCCAGTATAGCGGTGACAATG mismatches: 4 bulges: 0 |
pre-miRNA
TTGTCAATGTGACCGATATAATGGGCATGAATAATCATGATCAATGTCCAGTATAGCGGTGACAATGAGAT
dot-bracket secondary structure
.(.(((.(((.((((.((((.(((((((((.((....)).)).))))))).)))).)))).))).))).).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TTGTCAATGTGACCGATATAATGGGCATGAATAATCATGATCAATGTCCAGTATAGCGGTGACAATGAGAT
dot-bracket secondary structure
.(.(((.(((.((((.((((.(((((((((.((....)).)).))))))).)))).)))).))).))).).
SIMILARITIES| miRBase cte-mir-2001: 0.0002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
