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Species belonging to selected taxon:
Strongylocentrotus purpuratus
ABOUT THIS RECORD
ID:
MNEST034839
species:
Strongylocentrotus purpuratus
source:
miRBase, original name:
spu-mir-2001
(
MI0010269
)
Taxonomy by NCBI:
Strongylocentrotus purpuratus
Strongylocentrotus
Strongylocentrotidae
Echinoida
Echinacea
Euechinoidea
Echinoidea
Echinozoa
Eleutherozoa
Echinodermata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGTGACCGATATAATGGGCAT
miRNA*
GTCCAGTATAGCGGTGACAATG
mismatches:
4
bulges:
0
View larger
pre-miRNA
TTGTCA
ATGTGACCGATATAATGGGCAT
GAATAATCATGATCAAT
GTCCAGTATAGCGGTGACAATG
AGAT
dot-bracket secondary structure
.(.(((
.(((.((((.((((.(((((((
((.((....)).)).))
))))).)))).)))).))).))
).).
SIMILARITIES
miRBase
cte-mir-2001
:
0.0002
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"