ABOUT THIS RECORDspecies: Saccoglossus kowalevskii
miRNA family: mir-25
source: miRBase, original name: sko-mir-92a (MI0010157)
Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTGCACTTGTCCCGGCCTAA miRNA* AGGCCAGAATAAGAACAATGTT mismatches: 5 bulges: 0 |
pre-miRNA
CCTCATAACATGTCTGGGGACGCTCAGGCCAGAATAAGAACAATGTTGTGATGACAACAAATATTGCACTTGTCCCGGCCTAAGTGTTACAGTCACTATGG
C
dot-bracket secondary structure
).(((((...((.(((..((((((.(((((.(.(((((..(((((((((.......)).)))))))..))))).).))))).)))))).))).)).)))))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CCTCATAACATGTCTGGGGACGCTCAGGCCAGAATAAGAACAATGTTGTGATGACAACAAATATTGCACTTGTCCCGGCCTAAGTGTTACAGTCACTATGG
C
dot-bracket secondary structure
).(((((...((.(((..((((((.(((((.(.(((((..(((((((((.......)).)))))))..))))).).))))).)))))).))).)).)))))
.
SIMILARITIES| miRBase bfl-mir-92a-2: 3.0E-7 PMRD no hits microPC no hits | UniProt no hits RFAM 2mir-92: 5.0E-6 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
