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Species belonging to selected taxon:

Saccoglossus kowalevskii



ABOUT THIS RECORD

ID: MNEST034873
species: Saccoglossus kowalevskii
miRNA family: mir-25
source: miRBase, original name: sko-mir-92a (MI0010157)

Taxonomy by NCBI:
Saccoglossus kowalevskii Saccoglossus Harrimaniidae Enteropneusta Hemichordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATTGCACTTGTCCCGGCCTAA

miRNA*
AGGCCAGAATAAGAACAATGTT

mismatches: 5
bulges: 0

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pre-miRNA
CTCATAACATGTCTGGGGACGCTCAGGCCAGAATAAGAACAATGTTGTGATGACAACAAATATTGCACTTGTCCCGGCCTAAGTGTTACAGTCACTATGG
C


dot-bracket secondary structure
.(((((...((.(((..((((((.(((((.(.(((((..(((((((((.......)).)))))))..))))).).))))).)))))).))).)).)))))
.



SIMILARITIES
miRBase bfl-mir-92a-2: 0.0000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-92: 0.000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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