ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: miR-iab
source: miRBase, original name: dpu-mir-iab-4 (MI0012258)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGTATACCTTCAGTATACGTAAC miRNA* ACGTATACTGAATGTATCCTGA mismatches: 4 bulges: 1 |
pre-miRNA
TGGATGTTTAACCCCCTGGACGTATACTGAATGTATCCTGAGCTTCATTCATTCCGGTATACCTTCAGTATACGTAACAGGAGGCAACACTTTCAAC
dot-bracket secondary structure
((((.((....((.((((.((((((((((((.((((((.(((.........))).)).)))).))))))))))))..)))).))....)).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TGGATGTTTAACCCCCTGGACGTATACTGAATGTATCCTGAGCTTCATTCATTCCGGTATACCTTCAGTATACGTAACAGGAGGCAACACTTTCAAC
dot-bracket secondary structure
((((.((....((.((((.((((((((((((.((((((.(((.........))).)).)))).))))))))))))..)))).))....)).))))..
SIMILARITIES| miRBase dpu-mir-iab-4: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-iab-4: 2e-17 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
