ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: bantam
source: miRBase, original name: api-bantam (MI0013356)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGATCATTGTGAAAGCTAATT miRNA* CTGGTTTTCACTTTGATCTGTCAGA mismatches: 5 bulges: 2 |
pre-miRNA
TCGAAGCTGGTTTTCACTTTGATCTGTCAGATTTATCATTGTTCATTCTGAGATCATTGTGAAAGCTAATTT
dot-bracket secondary structure
)......((((((((((..(((((..(((((...............))))))))))..))))))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
[2] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
TCGAAGCTGGTTTTCACTTTGATCTGTCAGATTTATCATTGTTCATTCTGAGATCATTGTGAAAGCTAATTT
dot-bracket secondary structure
)......((((((((((..(((((..(((((...............))))))))))..))))))))))....
SIMILARITIES| miRBase bmo-bantam: 3.0E-9 PMRD no hits microPC no hits | UniProt no hits RFAM mbantam: 1.0E-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
[2] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"
