ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: mir-46
source: miRBase, original name: api-mir-281 (MI0013360)
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCATGGAGTTGCTCTCTTT miRNA* AGAGAGCTATCCGTCGACAGT mismatches: 3 bulges: 2 |
pre-miRNA
AAGAGAGCTATCCGTCGACAGTATAATTTTTAACTACACTGTCATGGAGTTGCTCTCTTTAT
dot-bracket secondary structure
((((((((..(((((.((((((.((.........)).)))))))))))...))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
AAGAGAGCTATCCGTCGACAGTATAATTTTTAACTACACTGTCATGGAGTTGCTCTCTTTAT
dot-bracket secondary structure
((((((((..(((((.((((((.((.........)).)))))))))))...))))))))...
SIMILARITIES| miRBase tca-mir-281: 0.000000000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-281: 0.00000000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, J. Comp. Intell. Bioinf. 2:109-119(2009)., "Computational Identification of MicroRNA Homologs from Acyrthosiphon pisum (Pea Aphid)"
