ABOUT THIS RECORDspecies: Caenorhabditis elegans
source: miRBase, original name: cel-mir-1021 (MI0005899)
Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGTGAGATCATGTGAAATCCTCGG miRNA* GAATTTTCCAAATATTCATATTTAAATTATTTGT mismatches: 8 bulges: 9 |
pre-miRNA
TACTGTTTTGAAACAAGTGAGATCATGTGAAATCCTCGGAGCTCGGAGCTTTGAATTTTCCAAATATTCATATTTAAATTATTTGTTTCAAACAGTA
dot-bracket secondary structure
((((((((.(((((((((((....(((((((....(((((((.....)))))))............))))))).....)))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM, RNA. 13:1492-1504(2007)., "Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans"
TACTGTTTTGAAACAAGTGAGATCATGTGAAATCCTCGGAGCTCGGAGCTTTGAATTTTCCAAATATTCATATTTAAATTATTTGTTTCAAACAGTA
dot-bracket secondary structure
((((((((.(((((((((((....(((((((....(((((((.....)))))))............))))))).....)))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM, RNA. 13:1492-1504(2007)., "Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans"
