miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038408
species: Caenorhabditis elegans
source: miRBase, original name: cel-mir-1021 (MI0005899)

Taxonomy by NCBI:
Caenorhabditis elegans Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGTGAGATCATGTGAAATCCTCGG

miRNA*
 GAATTTTCCAAATATTCATATTTAAATTATTTGT

mismatches: 8
bulges: 9
View larger
pre-miRNA
 TACTGTTTTGAAACAAGTGAGATCATGTGAAATCCTCGGAGCTCGGAGCTTTGAATTTTCCAAATATTCATATTTAAATTATTTGTTTCAAACAGTA

dot-bracket secondary structure
((((((((.(((((((((((....(((((((....(((((((.....)))))))............))))))).....)))))))))))))))))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM, RNA. 13:1492-1504(2007)., "Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans"



Liczniki na strone;