ABOUT THIS RECORDspecies: Caenorhabditis remanei
miRNA family: lin-4
source: miRBase, original name: crm-lin-4 (MI0011095)
Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCTCAAGTGTG miRNA* CGCCTGGGCTCTCTGGGTAC mismatches: 4 bulges: 0 |
pre-miRNA
ATGTTCTGATGCTTTCGGCCTGCTCCCTGAGACCTCAAGTGTGAGCGCACTGTTGATGCTTCACGCCTGGGCTCTCTGGGTACCAGGACGGCTTGAGCAG
ACAT
dot-bracket secondary structure
(((((....((((((((.((((..(((.((((.((((.(((((((.((((....).)))))))))).)))).)))).)))...)))).)))...))))))
))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
ATGTTCTGATGCTTTCGGCCTGCTCCCTGAGACCTCAAGTGTGAGCGCACTGTTGATGCTTCACGCCTGGGCTCTCTGGGTACCAGGACGGCTTGAGCAG
ACAT
dot-bracket secondary structure
(((((....((((((((.((((..(((.((((.((((.(((((((.((((....).)))))))))).)))).)))).)))...)))).)))...))))))
))))
SIMILARITIES| miRBase cel-lin-4: 1e-28 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 8e-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
