miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Heterorhabditis bacteriophora, Caenorhabditis japonica, Caenorhabditis brenneri, Caenorhabditis remanei



ABOUT THIS RECORD

ID: MNEST038485
species: Caenorhabditis remanei
miRNA family: lin-4
source: miRBase, original name: crm-lin-4 (MI0011095)

Taxonomy by NCBI:
Caenorhabditis remanei Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCCTGAGACCTCAAGTGTG

miRNA*
CGCCTGGGCTCTCTGGGTAC

mismatches: 4
bulges: 0

View larger
pre-miRNA
ATGTTCTGATGCTTTCGGCCTGCTCCCTGAGACCTCAAGTGTGAGCGCACTGTTGATGCTTCACGCCTGGGCTCTCTGGGTACCAGGACGGCTTGAGCAG
ACAT


dot-bracket secondary structure
(((((....((((((((.((((..(((.((((.((((.(((((((.((((....).)))))))))).)))).)))).)))...)))).)))...))))))
))))



SIMILARITIES
miRBase cel-lin-4: 1e-28

PMRD no hits

microPC no hits
UniProt no hits

RFAM lin-4: 8e-33

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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