ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: let-7
source: miRBase, original name: ppc-let-7 (MI0011149)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* CTGTACAACCTGTCTAGCTTGCC mismatches: 2 bulges: 1 |
pre-miRNA
GCGACCGAGCTCCTGCTGAGGTAGTAGGTTGTATAGTTCGGAATAATACCAACTGTATCAATTGGTGAAACTGTACAACCTGTCTAGCTTGCCAGGCATC
GCCCAGTTGCG
dot-bracket secondary structure
(((((.(.((.((((..(((.(((((((((((((((((........((((((.((...)).)))))).)))))))))))))).))).)))..))))....
)).).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
GCGACCGAGCTCCTGCTGAGGTAGTAGGTTGTATAGTTCGGAATAATACCAACTGTATCAATTGGTGAAACTGTACAACCTGTCTAGCTTGCCAGGCATC
GCCCAGTTGCG
dot-bracket secondary structure
(((((.(.((.((((..(((.(((((((((((((((((........((((((.((...)).)))))).)))))))))))))).))).)))..))))....
)).).))))).
SIMILARITIES| miRBase cel-let-7: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
