miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pristionchus pacificus



ABOUT THIS RECORD

ID: MNEST038593
species: Pristionchus pacificus
miRNA family: let-7
source: miRBase, original name: ppc-let-7 (MI0011149)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGTT

miRNA*
CTGTACAACCTGTCTAGCTTGCC

mismatches: 2
bulges: 1

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pre-miRNA
GCGACCGAGCTCCTGCTGAGGTAGTAGGTTGTATAGTTCGGAATAATACCAACTGTATCAATTGGTGAAACTGTACAACCTGTCTAGCTTGCCAGGCATC
GCCCAGTTGCG


dot-bracket secondary structure
(((((.(.((.((((..(((.(((((((((((((((((........((((((.((...)).)))))).)))))))))))))).))).)))..))))....
)).).))))).



SIMILARITIES
miRBase cel-let-7: 0.00000002

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 1e-41

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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