ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
miRNA family: MIR1144
source: miRBase, original name: cre-MIR1144a (MI0006205)
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGGCAGCGCGGGGCTGCTGG miRNA* GGTCCTGTGCTGCCCGTT mismatches: 1 bulges: 3 |
pre-miRNA
CGGCGGCGTTGGACTGCTGGGGTGCAGCAGGCTTGGAACCGGGCACGCAGGAGGTGGGTTTTGTGGCGGCAGGNAGCAGGCAGCGCGGGGCTGCTGGTGG
TGGTGGAGGAGGATGAAGTTCGCCATTCAAACAACCCTTTCTGCACCGGTCCTGTGCTGCCCGTTGCCTGCAGGAGCAAAACACACCCACTCCGTGTCCG
GCTCCAAGATTGCTGAACCCCTGTCGCTGGCTGCTGCCG
dot-bracket secondary structure
(((((((((..(.(.((.(((((.((((((.((((((.(((((((((.((..((((.(((((((....(((((.(((.((((((((((((((...(((.(
..(.(((((.(..((((........))))..)...))))))..)))))))))))))))))).))).)))))....))))))).))))..)).))))))))
).)))))).)))))).))))).)).))..)).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
CGGCGGCGTTGGACTGCTGGGGTGCAGCAGGCTTGGAACCGGGCACGCAGGAGGTGGGTTTTGTGGCGGCAGGNAGCAGGCAGCGCGGGGCTGCTGGTGG
TGGTGGAGGAGGATGAAGTTCGCCATTCAAACAACCCTTTCTGCACCGGTCCTGTGCTGCCCGTTGCCTGCAGGAGCAAAACACACCCACTCCGTGTCCG
GCTCCAAGATTGCTGAACCCCTGTCGCTGGCTGCTGCCG
dot-bracket secondary structure
(((((((((..(.(.((.(((((.((((((.((((((.(((((((((.((..((((.(((((((....(((((.(((.((((((((((((((...(((.(
..(.(((((.(..((((........))))..)...))))))..)))))))))))))))))).))).)))))....))))))).))))..)).))))))))
).)))))).)))))).))))).)).))..)).)))))))
SIMILARITIES| miRBase cre-MIR1144a: 1e-132 PMRD cre-miR1144b: 3e-28 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
evidence: cloned
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
