ABOUT THIS RECORDspecies: Picea abies
miRNA family: MIR397
source: miRBase, original name: pab-MIR397 (MI0016125)
Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGACG miRNA* TTAACCCTGCACTCAATAGTA mismatches: 2 bulges: 0 |
pre-miRNA
TAGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGATATTGTT
AACCCTGCACTCAATAGTATGTTTGCCAATGGCT
dot-bracket secondary structure
)(((((((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)))))))
))).))))))))))).)).)).))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
TAGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGATATTGTT
AACCCTGCACTCAATAGTATGTTTGCCAATGGCT
dot-bracket secondary structure
)(((((((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)))))))
))).))))))))))).)).)).))))).))))))
SIMILARITIES| miRBase tcc-MIR397: 7.0E-6 PMRD vvi-miR397b: 3.0E-5 microPC miR397: 3.0E-51 | UniProt no hits RFAM 7MIR397: 0.0005 |
Identical with: miR397 from microPC (MNEST045153) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"
