miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039382
species: Picea abies
miRNA family: MIR397
source: miRBase, original name: pab-MIR397 (MI0016125)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATTGAGTGCAGCGTTGACG

miRNA*
TTAACCCTGCACTCAATAGTA

mismatches: 2
bulges: 0

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pre-miRNA
AGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGATATTGTT
AACCCTGCACTCAATAGTA
TGTTTGCCAATGGCT


dot-bracket secondary structure
(((((((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)))))))
))).))))))))))).)).
)).))))).))))))



SIMILARITIES
miRBase tcc-MIR397: 0.000007

PMRD vvi-miR397b: 0.00003

microPC miR397: 3e-51
UniProt no hits

RFAM MIR397: 0.0005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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