ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR947
source: miRBase, original name: pta-MIR947 (MI0005796)
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCGGAATCTGTTACTGTTTC miRNA* CGCAGCAGCAGATTCTGATAGA mismatches: 3 bulges: 0 |
pre-miRNA
ACGCCTAAGGCGCAGCAGCAGATTCTGATAGAAGACTCAGGCAAAGCATTTGTTGTTGGCAGGTTGAATGCTTTCGGCAGAACCACCAATAACAAGGGGG
GCGCCTGGTGTCTTGCATCGGAATCTGTTACTGTTTCCTAGGCGT
dot-bracket secondary structure
(((((((.((.((((.(((((((((((((..(((((((((((...((.(((((((((((..((((...(((.....))).)))).)))))))))))....
)))))))).)))))..))))))))))))).)))).)).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
ACGCCTAAGGCGCAGCAGCAGATTCTGATAGAAGACTCAGGCAAAGCATTTGTTGTTGGCAGGTTGAATGCTTTCGGCAGAACCACCAATAACAAGGGGG
GCGCCTGGTGTCTTGCATCGGAATCTGTTACTGTTTCCTAGGCGT
dot-bracket secondary structure
(((((((.((.((((.(((((((((((((..(((((((((((...((.(((((((((((..((((...(((.....))).)))).)))))))))))....
)))))))).)))))..))))))))))))).)))).)).)))))))
SIMILARITIES| miRBase pab-MIR947: 3e-17 PMRD pta-miR947: 1e-78 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-miR947 from PMRD (MNEST051575) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
