miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST039436
species: Pinus taeda
miRNA family: MIR947
source: miRBase, original name: pta-MIR947 (MI0005796)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CATCGGAATCTGTTACTGTTTC

miRNA*
CGCAGCAGCAGATTCTGATAGA

mismatches: 3
bulges: 0

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pre-miRNA
ACGCCTAAGGCGCAGCAGCAGATTCTGATAGAAGACTCAGGCAAAGCATTTGTTGTTGGCAGGTTGAATGCTTTCGGCAGAACCACCAATAACAAGGGGG
GCGCCTGGTGTCTTGCATCGGAATCTGTTACTGTTTCCTAGGCGT


dot-bracket secondary structure
(((((((.((.((((.(((((((((((((..(((((((((((...((.(((((((((((..((((...(((.....))).)))).)))))))))))....
)))))))).)))))..))))))))))))).)))).)).)))))))



SIMILARITIES
miRBase pab-MIR947: 3e-17

PMRD pta-miR947: 1e-78

microPC no hits
UniProt no hits

RFAM no hits

Identical with: pta-miR947 from PMRD (MNEST051575)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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