ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1027
source: miRBase, original name: ppt-MIR1027a (MI0005969)
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCTATCTTCTCTTCCAATC miRNA* TTGGAAGAGCAGATCGAAAAA mismatches: 2 bulges: 0 |
pre-miRNA
GTGCAAGAGCAGATACTTAAGTCGAAGAGCATCTTTCTATCTTCTCTTCCAATCTATTGATCTGCCCTTCCAATACTATCAGATCAATAGATTGGAAGAG
CAGATCGAAAAATGCTCTCACCTTAAGGAGAGACAGCGACTC
dot-bracket secondary structure
.(((....)))....((((((..((.((((((.((((.((((.(((((((((((((((((((((...............)))))))))))))))))))))
.)))).)))).))))))))..))))))...............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
GTGCAAGAGCAGATACTTAAGTCGAAGAGCATCTTTCTATCTTCTCTTCCAATCTATTGATCTGCCCTTCCAATACTATCAGATCAATAGATTGGAAGAG
CAGATCGAAAAATGCTCTCACCTTAAGGAGAGACAGCGACTC
dot-bracket secondary structure
.(((....)))....((((((..((.((((((.((((.((((.(((((((((((((((((((((...............)))))))))))))))))))))
.)))).)))).))))))))..))))))...............
SIMILARITIES| miRBase ppt-MIR1027b: 7e-77 PMRD ppt-miR1027b: 7e-77 microPC no hits | UniProt no hits RFAM MIR1027: 1e-66 |
Identical with: ppt-MIR1027b from miRBase (MNEST039587) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Axtell MJ, Snyder JA, Bartel DP, Plant Cell. 19:1750-1769(2007)., "Common functions for diverse small RNAs of land plants"
