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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST039586
species:
Physcomitrella patens
miRNA family:
MIR1027
source:
miRBase, original name:
ppt-MIR1027a
(
MI0005969
)
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTCTATCTTCTCTTCCAATC
miRNA*
TTGGAAGAGCAGATCGAAAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GTGCAAGAGCAGATACTTAAGTCGAAGAGCATC
TTTCTATCTTCTCTTCCAATC
TATTGATCTGCCCTTCCAATACTATCAGATCAATAGA
TTGGAAGAG
CAGATCGAAAAA
TGCTCTCACCTTAAGGAGAGACAGCGACTC
dot-bracket secondary structure
.(((....)))....((((((..((.((((((.
((((.((((.(((((((((((
((((((((((...............))))))))))))
)))))))))
.)))).)))).)
)))))))..))))))...............
SIMILARITIES
miRBase
ppt-MIR1027b
:
7e-77
PMRD
ppt-miR1027b
:
7e-77
microPC
no hits
UniProt
no hits
RFAM
MIR1027: 1e-66
Identical with:
ppt-MIR1027b
from miRBase (
MNEST039587
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Axtell MJ, Snyder JA, Bartel DP,
Plant Cell. 19:1750-1769(2007).
,
"Common functions for diverse small RNAs of land plants"