ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR157
source: miRBase, original name: bna-MIR156c (MI0006484)
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATACTTCTGTCAATA mismatches: 0 bulges: 1 |
pre-miRNA
GGGAGTGATGCAGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACAAGGATATAAGGAAATTCAAGAAAGAGAGGAAAAAAGAGCCT
GCATCTTTACTCTTTTGTGCTCTCTATACTTCTGTCAATACCATTATTTATTCCT
dot-bracket secondary structure
((((((((....(((.((((((((((((((((((((((.(((((.((.((((........((((........)))).........(((.........)))
)))).))...))))).))))))))))).)))))))))))))).....))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GGGAGTGATGCAGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACAAGGATATAAGGAAATTCAAGAAAGAGAGGAAAAAAGAGCCT
GCATCTTTACTCTTTTGTGCTCTCTATACTTCTGTCAATACCATTATTTATTCCT
dot-bracket secondary structure
((((((((....(((.((((((((((((((((((((((.(((((.((.((((........((((........)))).........(((.........)))
)))).))...))))).))))))))))).)))))))))))))).....))))))))
SIMILARITIES| miRBase bol-MIR157a: 3e-30 PMRD bna-miR156c: 1e-84 microPC miR157: 3e-36 | UniProt no hits RFAM no hits |
Identical with: bna-miR156c from PMRD (MNEST048338) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
