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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040260
species: Brassica napus
miRNA family: MIR157
source: miRBase, original name: bna-MIR156c (MI0006484)

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAC

miRNA*
 GCTCTCTATACTTCTGTCAATA

mismatches: 0
bulges: 1
View larger
pre-miRNA
 GGGAGTGATGCAGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACAAGGATATAAGGAAATTCAAGAAAGAGAGGAAAAAAGAGCCT
GCATCTTTACTCTTTTGTGCTCTCTATACTTCTGTCAATACCATTATTTATTCCT

dot-bracket secondary structure
((((((((....(((.((((((((((((((((((((((.(((((.((.((((........((((........)))).........(((.........)))
)))).))...))))).))))))))))).)))))))))))))).....))))))))


SIMILARITIES
miRBase bol-MIR157a: 3e-30

PMRD bna-miR156c: 1e-84

microPC miR157: 3e-36		UniProt no hits

RFAM no hits

Identical with: bna-miR156c from PMRD (MNEST048338)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"



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